Washburn Lab Resources

Lab Protocols

Field Work

Rovers

Rover Use in Field

Rover Battery Charging

Drones

Stitching Images with Pix4Dmapper

Stitching Images with Pix4Dmapper: RE-mx Drone

Gridding the Reference Flight (QGIS)

Lab Work

Rootbot

Restarting the Image Script on the Rootbot’s Pi

Computational Work

General Logistics

Making QR Codes for Samples and Plants

Transferring Data Between Computers

“Do Nothing” Scripting to Progressively Automate tasks

Working with Singularity Containers

Singularity: RStudio in a box

Using Port Forwarding to Access Your Jupyter Notebook

Making a Singularity Container From Your Conda Environment

Using your Singularity container with Open OnDemand

In progress:

Overview: Suggested HPC Workflow

Using Open OnDemand

Website Operations

Adding Protocols

In progress:

Website Overview